Relevant Journal Publications CoAuthored by IGERT Investigators
1. Liu, E., M.D. Treiser, P.A. Johnson, P. Patel, A. Rege, J. Kohn, and P.V. Moghe. "Quantitative biorelevant profiling of material microstructure within 3D porous scaffolds via multiphoton fluorescence microscopy." J. Biomed. Mater. Res. B. Appl. Biomater. (In Press). 2007.2. Liu, E., M.D. Treiser, H. Patel, H.J. Sung, K.E. Roskov, J. Kohn, M. Becker, and P.V. Moghe. "High-content profiling of cell responsiveness to graded substrates based on combinatorially variant polymers. Combinatorial Chemistry and High Throughput Screening." (In Press). 2007.3. Treiser, M.D., E. Liu, R.A. Dubin, H.J. Sung, J. Kohn, and P.V. Moghe. "Profiling Cell-Biomaterial Interactions via Cell-Based Fluororeporter Imaging." Biotechniques. 43, 361-368. 2007.4. Anthony, L.J., M.F. Malius, C.A. Mahr, and P.V. Moghe. "Using discourse analysis to study a cross-disciplinary learning community: Insights from an IGERT Training Program." J. Eng. Education. 96, 141-56. 2007.5. Androulakis, I.P., E. Yang, D.C. Dubois, and W.J. Jusko. "Analysis of time-series gene expression data: Methods, challenges and opportunities." Ann. Rev. Biomed. Eng. 9, 205-28. 2007.6. Christensen, B., C.C. Kazanecki, T.E. Petersen, S.R. Rittling, D.T. Denhardt, and E.S. Sorensen. "Cell-type specific post-translational modifications of mouse osteopontin are associated with different adhesive properties." J. Biol. Chem. 282, 19463-82. 2007.7. Fernandez, J.R., W.J. Welsh, and B.L. Firestein. "Structural characterization of the zinc binding domain in cytosolic PSD-95 interactor (CYPIN): Role of zinc binding in quanine deamination and dendrite branching." Proteins: Structure, Function, and Bioinformatics. (In Press). 2007.8. Haders, D., A. Burukhin, Y. Huang, C.C. Kazanecki, D.T. Denhardt, D.J.H. Cockayne, and R.E. Riman. "Deposition of Crystallographically Tunable Hydroxyapatite Films with a CaTiO3 Interfacial Layer onto Ti6Al4V by TEP Regulated Hydrothermal Crystallization." (In Preparation). 2007.9. Iverson, N., N. Plourde, E. Chnari, G.B. Nackman, and P.V. Moghe. "Convergence of Nanotechnology and Cardiovascular Medicine: Progress and Emerging Prospects." BioDrugs. (In Press). 2007.10. Jiang, X., P.C. Georges, B. Li, Y. Du, M.K. Kutzig, M.L. Previtera, N.A. Langrana, and B.L. Firestein. "Cell growth in response to mechanical stiffness is affected by neuron-astroglia interactions." Biophysical Journal. (In Press). 2007.11. Johnson, M.L. and K.E. Uhrich. "Concurrent release of antimicrobials and salicylic acid from poly(anhydride-esters)." J. Controlled Release. (Submitted). 2007.12. Kazanecki, C.C., A. Kowalski, S.Rittling, and D. Denhardt. "Characterization of anti-Osteopontin Antibodies: Sensitivity to Post-Translational Modification." J. Cell Biochem. (In Press). 2007.13. Kazanecki, C.C., D.J. Uzwiak, and D.T. Denhardt. "Control of Osteopontin Signaling and Function by Post-translational Modifications and Protein Folding." J Cell Biochem. (In Press). 2007.14. Maguire, T., A.E. Davidovich, E.J. Wallenstein, E. Novik, N. Sharma, H. Pedersen, I.P. Androulakis, R. Schloss, and M.L. Yarmush. "Control of hepatic differentiation via cellular aggregation in an alginate microenvironment." Biotechnol. Bioeng. 98, 631-44. 2007.15. Maguire, T., M. Yarmush, and A. Jayaraman. "Gene Expression Profiling of Long-Term Changes in Rat Liver Following Burn-Injury." Journal of Surgical Research. 2007.16. Pereira, M., R.I. Sharma, R. Penkala, T.A. Gentzel, J.E. Schwarzbauer, and P.V. Moghe. "Engineered cell-adhesive nanoparticles nucleate extracellular matrix assembly." Tissue Eng. 13, 567. 2007.17. Riman, R., A. Burukhin, E. Zlotnikov, and D. Haders. "Hydroxyapatite with controllable size and morphology." Claims Accepted. P29,711A PCT. 2007.18. Riman, R.E. and A. Sever. "Biomimetic Hydroxyapatite Synthesis." Docket No. 32,616-A, USA. 2007.19. Steege, K.E., J. Wang, K.E. Uhrich, and E.W. Castner. "Local Polarity and Microviscosity in the Hydrophobic Cores of Amphiphilic Star-like and Scorpion-like Macromolecules." Macromolecules. 40, 3739-3748. 2007.20. Stickle, M., R. Kortan, S. Rivillon, H. Katz, C. Kloc, T. Siegrist, and Y. Chabal. "Molecular ordering in bis(phenylenyl)bithiophenes." J. Mater. Chem. (In Press). 2007.21. Sundararaghavan, H.G., G.A. Monteiro, N.A. Lapin, Y.J. Chabal, J.R. Miksan, and D.I. Shreiber. "Genipin-induced changes in collagen gels: correlation of mechanical properties to fluorescence." Journal of Biomaterials Research - A. (In Press). 2007.22. Wang, J.Z., N. Plourde, N. Iverson, P.V. Moghe, and K.E. Uhrich. "Nanoscale Amphiphilic Macromolecules as Lipoprotein Inhibitors: The role of charge and architecture." Int. J. Nanomedicine. (In Press). 2007.23. Yang, E., P.T. Foteinou, M.L. Yarmush, and I.P. Androulakis,. "A novel non-overlapping bi-clustering algorithm for network generation using living cell array data." Bioinformatics. 23, 2306-13. 2007.24. Yang, E., T. Maguire, M.L. Yarmush, and I.P. Androulakis. "Informative gene selection and design of regulatory networks using integer optimization." Comp. Chem. Eng. (In Press). 2007.25. Yang, E., T. Maguire, M.L. Yarmush, F. Berthiaume, and I.P. Androulakis. "Bioinformatics analysis of the early inflammatory response in a rat thermal injury model." BMC Bioinformatics. 8, 10. 2007.26. Yang, E., T.J. Maguire, M.L. Yarmush, F. Berthiaume, and I.P. Androulakis. "Identification of regulatory mechanisms of hepatic response to thermal injury." Comp. Chem. Eng. 29, 535-46. 2007.27. Yang, E., D. Simcha, R.R. Almon, D.C. Dubois, W.J. Jusko, and I.P. Androulakis. "Context specific transcription factor prediction." Ann. Biomed. Eng. 35, 1053-67. 2007.28. Moghe, P.V. and C.M. Roth. " Multidisciplinary graduate curriculum on integrative biointerfacial engineering." Chem. Eng. Education. 40, 251-258. 2006.29. Bae, Y.H., P.A. Johnson, Florek CA, J. Kohn, and P.V. Moghe. "Minute changes in composition of polymer substrates produce amplified differences in cell adhesion and motility via optimal ligand conditioning." Acta Biomaterialia. 2, 473-82. 2006.30. Maguire, T., E. Novik, R. Schloss, and M.L. Yarmush. "Alginate-PLL microencapsulation: effect of the differentiation of embryonic stem cells into hepatocytes." Biotechnol. Bioeng. 93, 581-91. 2006.31. Novik, E., T. Maguire, K. Orlova, R. Schloss, and M.L. Yarmush. "Embryoid body-mediated differentiation of mouse embryonic stem cells along a hepatocytic lineage: insights from gene expression profiles." Tissue Eng. 12, 1515-25. 2006.32. Sharma, R.I., M. Pereira, J.E. Schwarzbauer, and P.V. Moghe. "Albumin-derived nanocarriers: substrates for enhanced cell adhesive ligand display and cell motility." Biomaterials. 27, 3589-98. 2006.33. Yurke, B., D.C. Lin, and N.A. Langrana. "Use of DNA nanodevices in modulating the mechanical properties of polyacrylamide gels." DNA Computing Lecture Notes. 3892, 417-426. 2006.34. Dasgupta, A., R. Hughey, P. Lancin, L. Larue, and P.V. Moghe. "E-cadherin synergistically induces hepatospecific phenotype and maturation of embryonic stem cells in conjunction with hepatotrophic factors." Biotechnol. Bioeng. 92, 257-66. 2005.35. Grant, C.D., M.R. DeRitter, K.E. Steege, T.A. Fadeeva, and E.W. Castner. "Fluorescence probing of interior, interfacial, and exterior regions in solution aggregates of poly(ethylene oxide)- poly(propylene oxide)-poly(ethylene oxide) triblock copolymers." Langmuir. 21, 1745-52. 2005.36. Grant, C.D., K.E. Steege, M.R. Bunagan, and E.W. Castner. "Microviscosity in multiple regions of complex aqueous solutions of poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide)." J. Phys. Chem. B. 109, 22273-84. 2005.37. Knapinska, A., P. Irizarry-Barreto, I.P. Androulakis, and G. Brewer. "Molecular mechanisms regulating mRNA stability: Physiological and pathologic significance." Current Genomics. 6, 471-486. 2005.38. Lin, D.C., N.A. Langrana, and B. Yurke. "Force displacement relations for spherical inclusions in finite elastic media." J. Appl. Phys. 97, 043510. 2005.39. Lin, D.C., N.A. Langrana, and B. Yurke. "Inducing reversible stiffness change in DNA-crosslinked gels." J. Mater. Res. 20, 1456-16. 2005.40. Lin, D.C., B. Yurke, and N.A. Langrana. "Use of rigid spherical inclusions in Young's moduli determination: application to DNA-crosslinked gels." J. Biomech. Eng. 27, 571-9. 2005.41. Peppelenbosch, M.P., F. Milano, C.V. Ferreira, A. Knapinska, S.H. Diks, and C.A. Spek. "RNA-based gene therapy for haemophilia B." Current Genomics. 6, 401-404. 2005.42. Renganathan, H., H. Vaidyanathan, A. Knapinska, and J.W. Ramos. "Phosphorylation of PEA-15 switches: Binding specificity from ERK MAP Kinase to FADD." Biochem. J. 390, 729-35. 2005.43. Stickle, M., R. Kortan, Z. Bao, H. Katz, and Y. Chabal. "Structural characterization of a functionalized organic semiconductor." Proc. Mater. Res. Soc. Symp. I3, 16. 2005.44. Dubey, A., G. Sharma, C. Mavroidis, S.M. Tomassone, K.P. Nikitczuk, and M.L. Yarmush. "Computational studies of viral protein nano-actuators." J. Comput. Theor. Nanosci. 1, 18-28. 2004.45. Lin, D.C., B. Yurke, and N.A. Langrana. "Mechanical properties of a reversible, DNA-crosslinked polyacrylamide hydrogel." J. Biomech. Eng. 26, 104-10. 2004.46. Sharma, R.I., J. Kohn, and P.V. Moghe. "Poly(ethylene glycol) enhances cell motility on protein based poly(ethylene glycol)-polycarbonate substrates: a mechanism for cell-guided ligand remodeling." J. Biomed. Mater. Res. 69, 114-23. 2004.
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